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徐  云

     

电话:0551-63602441

Emailxuyun@ustc.edu.cn

个人主页:http://staff.ustc.edu.cn/~xuyun/


   

主要研究方向:大数据挖掘算法及应用,并行编程模型及性能优化等。


徐云,博士,教授,博导。2002年中国科学技术大学计算机系博士毕业,获计算机软件与理论专业博士学位。1999年起在中国科学技术大学计算机学院、国家高性能计算中心(合肥)从事并行计算与应用相关的研究和教学工作。现为国家高性能计算中心(合肥)副主任和安徽省计算机学会秘书长,IEEEACM和中国计算机学会会员、中国计算机学会理论计算机科学专委会委员。近几年主要研究多核并行编程模型及性能优化、大规模程序和生物序列分析算法等。至今已主持国家重点自然科学基金子课题及面上课题、973子课题、863子课题多项,以及华为、中电14所等横向合作项目。在国内外重要学术期刊和会议发表学术论文80余篇。

获奖情况:

[1]“并行计算”课程的创建及其辐射与示范作用,国家级教学成果二等奖,排名第22009.9

[2]“并行计算”相关课程教学团队,国家级教学团队,排名第32009.9

[3] 中国科大王宽诚育才奖一等奖,个人,2009.8

主要论著

  1. Haoyu Cheng, Yong Zhang and Yun Xu. BitMapper2: a GPU-accelerated all-mapper based on the sparse q-gram index. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019, 16(3): 886-897.

  2. Pengcheng Wang, Jeffrey Svajlenko, Yanzhao Wu, Yun Xu, Chanchal K. Roy. CCAligner: a token based large-gap clone detector. In Proceedings of the 40th International Conference on Software Engineering (ICSE'18). May 30 – June 1, 2018, Gothenburg, Sweden. pp. 1066-1077.

  3. Haoyu Cheng, Ming Wu, Yun Xu. FMtree: A fast locating algorithm of FM-indexes for genomic data. Bioinformatics, 2018, 34(3): 416–424.

  4. Haoyu Chen, Huaipan Jiang, Jiaoyun Yang, Yun Xu, Yi Shang. BitMapper: an efficient all-mapper based on bit-vector computing. BMC Bioinformatics, 2015, 16: 192.

  5. Jiaoyun Yang, Yun Xu, Yi Shang and Guoliang Chen. A Space-Bounded Anytime Algorithm for the Multiple Longest Common Subsequence Problem. IEEE Transactions on Knowledge and Data Engineering, 2014, 26(11): 2599-2609.

  6. Weihua Pan, Yanan Zhao, Yun Xu*, Fengfeng Zhou. WinHAP2: an extremely fast haplotype phasing program for long genotype sequences. BMC Bioinformatics, 2014, 15:164.

  7. Jiaoyun Yang, Yun Xu, Yi Shang. A new progressive algorithm for multiple longest common subsequences problem and its efficient parallelization. IEEE Trans. on Parallel and Distributed Systems, 2013, 24(5): 862-870.

  8. Tao Yan, Rynson Lau, Yun Xu, Liusheng Huang. Depth Mapping for Stereoscopic Videos. International Journal of Computer Vision, 2013, 102: 293-307.

  9. Jiaoyun Yang, Yun Xu, Xiaohui Yao, and Guoliang Chen. FNphasing: A novel fast heuristic algorithm for haplotype phasing based on flow network model. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2013, 10(2): 372-382.

  10. Yun Xu, Jiaoyun Yang, Yuzhong Zhao, Yi Shang. Improved Voting Algorithms For Planted (l, d) Motif Search. Information Sciences, 2013, 237: 305-312.

  11. Haitao Jiang, Yun Xu, Yin Liao, Guojie Jin, Guoliang Chen. KBT Operating system kernel level binary translation system, Journal of Software(JSW), 2013, 8(6): 1275-1280.

  12. Yun Xu, Da Teng, Yiming Lei. MinePhos: a literature mining system for protein phoshphorylation information extraction. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9(1): 311-315, 2012.

  13. Yan Li, Jianping Wang, Chunming Qiao, Ashwin Gumaste, Yun Xu, Yinlong Xu. Integrated Fiber-Wireless (FiWi) Access Networks Supporting Inter-ONU Communications.  IEEE/OSA Journal of Lightwave Technology. 2010, 28(5): 714-724.

  14. Yun Xu, ZhiHao Wang, YiMing Lei, YuZhong Zhao and Yu Xue. MBA: A Literature Mining System for Extracting Biomedical Abbreviations. BMC Bioinformatics. 2009, 10:14.

  15. Zhi-Hui Hu, Yun Xu, Liu-Sheng Huang and Howard Leung. A Chinese Handwriting Education System with Automatic Error Detection. The Journal of Software (JSW), 2009, 4(2): 101-106.

  16. Chen Guoliang, Sun GuangZhong, Xu Yun and Long Bai. Integrated research of parallel computing: Status and Future. Chinese Sci Bull, 2009, 54: 1845-1853.

  17. Yuzhong Zhao, Yun Xu, Zhihao Wang, Hong Zhang and Guoliang Chen. A Better Block Partition and Ligation Strategy for Individual Haplotyping. Bioinformatics. 2008, 24(23): 2720-2725.

  18. Yuzhong Zhao, Yun Xu, Qiangfeng Zhang, Guoliang Chen. An Overview of the Haplotype Problems and Algorithms. Frontiers of Computer Science in China. 2007, Vol.1, No3.272-282.

  19. 陈国良, 孙广中, 徐云, 吕敏. 并行算法研究方法学. 计算机学报, 2008, 31(9): 1493-1502.

  20. 陈国良, 苗乾坤, 孙广中, 徐云, 郑启龙. 分层并行计算模型. 中国科学技术大学学报(50周年校庆专刊), 2008, 38(7): 841-847.










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